Secmarker

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Download

The current version is 0.4 (Aug 2016)

secmarker-0.4.tar.gz

Dependencies

Infernal package version 1.1 (available at http://infernal.janelia.org/).

RNAplot from the ViennaRNA package (available at http://www.tbi.univie.ac.at/RNA/). Version >= 2.0 recomended. (Secmarker only requires RNAplot if -plot option is active)

Install

tar xfz secmarker-0.4.tar.gz
cd secmarker-0.4
./setup.py 
./run_test.py

'setup.py' looks for cmsearch and esl-sfetch (Infernal), and RNAplot in your bash. Alternatively, you can provide the full path to the infernal installation with --infernal option, and/or the RNAplot executable with --RNAplot option.